<rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Hacker News: ampdepolymerase</title><link>https://news.ycombinator.com/user?id=ampdepolymerase</link><description>Hacker News RSS</description><docs>https://hnrss.org/</docs><generator>hnrss v2.1.1</generator><lastBuildDate>Tue, 16 Jun 2026 15:47:30 +0000</lastBuildDate><atom:link href="https://hnrss.org/user?id=ampdepolymerase" rel="self" type="application/rss+xml"></atom:link><item><title><![CDATA[New comment by ampdepolymerase in "Researchers find a way to make the HIV virus visible within white blood cells"]]></title><description><![CDATA[
<p>The phospholipid micelles are non-trivial (trade secret) to make and it's the major reason why African nations and other countries have not been able to successfully create mRNA vaccines at scale.<p>A cell is a bundle of proteins wrapped in a membrane that's sort of an oil drop (or as another comment said, a fat bubble). In biology it's called a phospholipid bilayer. Fun fact you can actually "merge" cells together with the help of certain viruses. Drug delivery usually involves moving molecules though this phospholipid bilayer which involves all sorts of tricks. There are pores and receptors on the membrane that can selectively bind to different biochemical molecules and proteins. A good chunk of research in bioinformatics, chemoinformatics, quantum computing is focusing on simulating protein binding dynamics and protein-protein interactions on various levels so we can design drugs that can bind to the receptors we want. (Alphafold made this a lot easier to figure out how to go from a sequence of genetic material to a specific protein shape) A RNA vaccine is kinda like a virus in that it has to be taken into a so the cellular machinery (ribosomes) can build the protein that it codes for. So having a micelle (or nanoparticle, whatever you want to call it) that can get absorbed and merged into the cell that you are targeting specifically is a Big Deal.</p>
]]></description><pubDate>Fri, 06 Jun 2025 19:19:09 +0000</pubDate><link>https://news.ycombinator.com/item?id=44204074</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=44204074</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=44204074</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Ask HN: A friend has brain cancer: any bio hacks that worked?"]]></title><description><![CDATA[
<p>> <i>getting infected with the zika virus (probably the best thing to do IMO</i><p>Virology based methods don't last very long because the immune system adapts quickly. If you want to go down that route, make sure you have experts on hand.</p>
]]></description><pubDate>Fri, 10 Jan 2025 07:59:40 +0000</pubDate><link>https://news.ycombinator.com/item?id=42653621</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=42653621</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=42653621</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Recovering from a kidney donation"]]></title><description><![CDATA[
<p>You should try to convince the others on the Facebook groups to undergo full genome DNA sequencing (around $1K USD, usually not covered by insurance, I would pay for the other patients if I were you, their data is more than worth it given it’s your life on the line) and submit the data to patient networks and orphan drug groups. There are lots of bioinformatics methods now (thanks to mostly advances in ML among other things) that can derive insights into the problem, without any physical assays or laboratory tests.</p>
]]></description><pubDate>Sun, 17 Nov 2024 09:49:21 +0000</pubDate><link>https://news.ycombinator.com/item?id=42163132</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=42163132</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=42163132</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Mitochondria Are Alive"]]></title><description><![CDATA[
<p>> <i>the mitochondria is the powerhouse of the cell</i><p>The explanation doesn't get much better at higher levels. You have the Krebs cycle which biology people religiously memorize but it doesn't really explain much either. The actual interesting part is usually handwaved away as "magical enzyme/protein" catalysis. Understanding how the mitochondrial proteins/enzyme catalysts function would usually require a graduate degree, and maybe a background in biochemistry and biophysics.</p>
]]></description><pubDate>Fri, 08 Nov 2024 20:04:45 +0000</pubDate><link>https://news.ycombinator.com/item?id=42090036</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=42090036</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=42090036</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "AlphaProteo generates novel proteins for biology and health research"]]></title><description><![CDATA[
<p>Also "off target effects".</p>
]]></description><pubDate>Thu, 05 Sep 2024 17:56:04 +0000</pubDate><link>https://news.ycombinator.com/item?id=41458989</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=41458989</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=41458989</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "I should have loved biology (2020)"]]></title><description><![CDATA[
<p>Work/volunteer as a minimum wage software developer lab rat (or whatever your day job speciality is). There are plenty of labs that are in need of free labor when it comes to software/engineering support in general, just ask around.</p>
]]></description><pubDate>Sun, 21 Apr 2024 22:06:13 +0000</pubDate><link>https://news.ycombinator.com/item?id=40109640</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=40109640</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=40109640</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "I should have loved biology (2020)"]]></title><description><![CDATA[
<p>Most of the pop sci books are useless for practical use cases, and similarly the Feynman lectures self select for the physics/mathematically inclined.<p>Biology is a leaky abstraction, it's very hard to do anything with rigor without having a strong foundation in the fundamentals. You see the same discussion on hacker news when it comes to music, people are more interested in mapping programming concepts to music notation and complaining about western music presentation than the music itself. For biology, you need need to have a firm understanding of the central dogma and biochemistry if you want to do anything beyond surface level empirical trial and error. Most people, especially the "hacker types", only have a vague understanding of the former i.e. DNA translation and transcription and that's about the limit. You absolutely have to gain an intuition for biochemistry if you want to do things with rigor, otherwise you will just be the biotech equivalent of a bootcamp web developer, fit for washing test tubes and not much else.</p>
]]></description><pubDate>Sun, 21 Apr 2024 20:51:05 +0000</pubDate><link>https://news.ycombinator.com/item?id=40109124</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=40109124</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=40109124</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Beetle grows ‘termite’ on back to steal food"]]></title><description><![CDATA[
<p>No, no, no. Explanation is inaccurate. The central dogma is the <i>central dogma</i> because information flow is primarily one way (yes there are exceptions i.e. epigenetics but primary information flow is from DNA to protein) and this is the fundamental tenet underpinning our current understanding of biology.<p>> <i>A multicellular organism gametes divide only a handfull of times per generation.</i><p>That's what recombination is for during sexual reproduction.<p>> <i>It does not contain informtion how to assemble the molecular machines from the proteins, or how "to be alive" in general.</i><p>Unless you subscribe to the creationist or Larmarckian schools of thought, this is flat out wrong. DNA polymerase and similar analogues like reverse transcriptase do not exist in a vacuum. There are entire branches of evolutionary biology dedicated to studying their formation. The main transcription proteins, helicase, polymerase, and ribosomes can all be assembled from the basic proteins they themselves transcribe. (Incidentally figuring out the ultimate structure that a protein chain assembles into is what AlphaFold does, bioinformatics and ML's crowning jewel)<p>> <i>There is heritable information outside of DNA, that is epigenetic in its nature.</i><p>When biologists refer to epigenetics, they mean information carriage that's not strictly tied to the nucleotides. This doesn't meant <i>DNA</i> isn't involved. Most epigenetics I can think of off the top of my head all involve the DNA transcription mechanism in some way.</p>
]]></description><pubDate>Thu, 07 Sep 2023 06:29:33 +0000</pubDate><link>https://news.ycombinator.com/item?id=37415422</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=37415422</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=37415422</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Nuclear-Powered Cardiac Pacemakers"]]></title><description><![CDATA[
<p>> <i>This is still relevant to his concern, but from the other end. They might be making the labor artificially scarce to increase pay.</i><p>This is very much true. I find that a lot of people in tech seem to put healthcare on a pedestal and believe that the professionalisation and gatekeeping of the industry create a better outcome than other engineering fields. This is very much untrue, the healthcare field is in need of massive disruption and lobbying to increase labor supply. You are being downvoted because a lot of tech people here hate to imagine that healthcare at the highest level is still subject to market forces like everything else. Medical training is being severely gatekept and hindered via the current apprenticeship/residency system. After all, we call the worst medical student, doctor. If you want to improve healthcare, tie medical school admission to the MCAT score, and <i>only</i> the MCAT score. You are not going to get better doctors just because candidates spend their summers building houses in some impoverished third world country.</p>
]]></description><pubDate>Fri, 02 Sep 2022 16:46:41 +0000</pubDate><link>https://news.ycombinator.com/item?id=32692913</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=32692913</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=32692913</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Whole Genome Sequencing"]]></title><description><![CDATA[
<p>Note FDA rules require them to retain the data for a few years.</p>
]]></description><pubDate>Mon, 25 Jul 2022 23:05:14 +0000</pubDate><link>https://news.ycombinator.com/item?id=32232121</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=32232121</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=32232121</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "College Accreditors: 'New Colleges Need Not Apply'"]]></title><description><![CDATA[
<p>There is a bigger iceberg lurking around. Look up the people who control medical school accreditation and funding. They have more blood on hands than many other industries put together. Medical innovation has been slowed down by magnitudes because of their gatekeeping.</p>
]]></description><pubDate>Tue, 19 Jul 2022 07:06:55 +0000</pubDate><link>https://news.ycombinator.com/item?id=32148393</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=32148393</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=32148393</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Sri Lanka is having a textbook currency crisis, triggered by policy mistakes"]]></title><description><![CDATA[
<p>More specifically pseudo science not guided by empiricism. The line between science and pseudo science is very thin. Scientific theories are often incorrect, especially in life science, but we refine upon them based in empirical and observed data.</p>
]]></description><pubDate>Wed, 13 Jul 2022 03:54:23 +0000</pubDate><link>https://news.ycombinator.com/item?id=32078876</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=32078876</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=32078876</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "I should have loved biology"]]></title><description><![CDATA[
<p>Voit looks gimmicky. Uri Alon's treatment (An Introduction to Systems Biology) is much better.</p>
]]></description><pubDate>Sat, 09 Jul 2022 18:18:35 +0000</pubDate><link>https://news.ycombinator.com/item?id=32037871</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=32037871</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=32037871</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "The illusion of evidence based medicine"]]></title><description><![CDATA[
<p>There is a bottleneck in the number of MD positions. Without the MD title, your typical life science researcher cannot easily carry out medical research. Medical education and training has a scale problem.</p>
]]></description><pubDate>Thu, 24 Mar 2022 23:13:44 +0000</pubDate><link>https://news.ycombinator.com/item?id=30796693</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=30796693</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=30796693</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Stainless steel leaches nickel and chromium into foods during cooking (2013)"]]></title><description><![CDATA[
<p>I won't put too much stock in unglazed clay cooking ware.</p>
]]></description><pubDate>Thu, 10 Mar 2022 15:28:32 +0000</pubDate><link>https://news.ycombinator.com/item?id=30627959</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=30627959</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=30627959</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "C Package Manager"]]></title><description><![CDATA[
<p>The best C and C++ package manager I have used is Xmake/Xrepo. They support all the major package repositories out of the box including Vcpkg and Conan.<p><a href="https://github.com/xmake-io/xmake#supported-package-repositories" rel="nofollow">https://github.com/xmake-io/xmake#supported-package-reposito...</a></p>
]]></description><pubDate>Tue, 08 Mar 2022 04:26:30 +0000</pubDate><link>https://news.ycombinator.com/item?id=30596436</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=30596436</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=30596436</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Ask HN: How to raise funds for rare disease research?"]]></title><description><![CDATA[
<p>Human trials for drugs is the expensive part. If the situation is urgent, look into compassionate use and right to try. If you have time, the fastest way to get it to production is to have the trials done in a lower cost country. At the end of the day if you control the experiment and manufacturing pipeline, then you can make a develop a drug for a much lower price. You absolutely cannot cut corners in the experimental and engineering stage even if you do it in a more compliant regulatory regime.</p>
]]></description><pubDate>Tue, 08 Feb 2022 00:06:31 +0000</pubDate><link>https://news.ycombinator.com/item?id=30253342</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=30253342</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=30253342</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Moderna’s HIV vaccine has officially begun human trials"]]></title><description><![CDATA[
<p>I haven't looked into the Moderna vaccine but in general there are many ways to get rid of a virus. Using the typical B cell + viral glycoprotein is the most obvious way as viral activity is hard to detect when replicating inside a cell but there are many stages in the viral replication process which can be inhibited. Inhibiting protease cleavage of the viral polyprotein or preventing polymerase formation are all possible solutions. They don't really count as vaccines though.</p>
]]></description><pubDate>Mon, 31 Jan 2022 20:50:28 +0000</pubDate><link>https://news.ycombinator.com/item?id=30154131</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=30154131</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=30154131</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "A virus helped a woman survive a dangerous antibiotic-resistant infection"]]></title><description><![CDATA[
<p>Fwiw, rarely can lab designed viruses i.e. made through splicing have features that are more "optimal" (or efficient) than those that are evolved. Directed evolution is truly marvelous when done properly (it won a Nobel!).</p>
]]></description><pubDate>Mon, 31 Jan 2022 17:09:56 +0000</pubDate><link>https://news.ycombinator.com/item?id=30150467</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=30150467</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=30150467</guid></item><item><title><![CDATA[New comment by ampdepolymerase in "Bending the Rules on Bacteria (2011)"]]></title><description><![CDATA[
<p>Just because the bacteria is dead doesn't mean the toxins it produced have been decomposed by the heat. Leaving food out is very bad idea.</p>
]]></description><pubDate>Sat, 08 Jan 2022 20:19:04 +0000</pubDate><link>https://news.ycombinator.com/item?id=29855727</link><dc:creator>ampdepolymerase</dc:creator><comments>https://news.ycombinator.com/item?id=29855727</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=29855727</guid></item></channel></rss>