<rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Hacker News: murphyslab</title><link>https://news.ycombinator.com/user?id=murphyslab</link><description>Hacker News RSS</description><docs>https://hnrss.org/</docs><generator>hnrss v2.1.1</generator><lastBuildDate>Wed, 19 Aug 2026 02:08:44 +0000</lastBuildDate><atom:link href="https://hnrss.org/user?id=murphyslab" rel="self" type="application/rss+xml"></atom:link><item><title><![CDATA[New comment by murphyslab in "AI in drug discovery – what it is, where we stand and the path forward"]]></title><description><![CDATA[
<p>NB: The post was updated twice. The first changed the link to the Nature Reviews Drug Discovery article; the second changed it back to Derek Lowe's blog post with the NRDD article in the body.</p>
]]></description><pubDate>Sun, 16 Aug 2026 07:45:43 +0000</pubDate><link>https://news.ycombinator.com/item?id=49317796</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=49317796</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=49317796</guid></item><item><title><![CDATA[New comment by murphyslab in "AI in drug discovery – what it is, where we stand and the path forward"]]></title><description><![CDATA[
<p>My apologies for the lack of clarity in my prior comment; it was composed in haste. To be clear, I am a bit of a Derek Lowe fanboy. I value the work that he does in offering insight on his areas of expertise to the public at large because he has both the necessary understanding and the ability to communicate clearly. Few people have his level of background knowledge alongside the capacity to wade into the depths of pharmaceutical chemistry and then communicate that information and his personal perspective to enrich the commons.<p>What I was getting at with the issue of credibility is that <i>I</i> (or most others) would have time determining if a particular scholarly author in pharma is a good person to listen to on the subject. But having evidence that Derek Lowe is an honest broker of information in that domain, given his long history of commentary as well as other chemists I know who eagerly read his commentary, I'm willing to defer to his assessment.</p>
]]></description><pubDate>Sun, 16 Aug 2026 07:42:33 +0000</pubDate><link>https://news.ycombinator.com/item?id=49317779</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=49317779</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=49317779</guid></item><item><title><![CDATA[New comment by murphyslab in "AI in drug discovery – what it is, where we stand and the path forward"]]></title><description><![CDATA[
<p>Derek Lowe is someone whom I greatly admire and his work as a science communicator is a true service to the profession and to science at large. It is not intended as an insult in any way. I've known a great number of competent chemists, but few are as effective as communicators as he is.</p>
]]></description><pubDate>Sun, 16 Aug 2026 07:30:43 +0000</pubDate><link>https://news.ycombinator.com/item?id=49317718</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=49317718</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=49317718</guid></item><item><title><![CDATA[New comment by murphyslab in "AI in drug discovery – what it is, where we stand and the path forward"]]></title><description><![CDATA[
<p>Derek Lowe as a science communicator, and others like him, is sorely needed to understand the real meaning and significance of the study and others. I say that as someone with a PhD in chemistry who's been to plenty of presentations on drug discovery topics.<p>It's difficult to calibrate statements made by other scientists unless you're well embedded within a field: Is this someone whose opinions matter? Are they the subject matter expert they make themselves out to be? Is this research itself truly impactful? Is it really 5 years until it will be realized outside of academic labs? Etc...<p>It's difficult to decipher questions around credibility because they rely on real-world interactions and associations that extend beyond the physical tokens of paper counts, publication venues, citations, and author lists that typically lag behind the front of human knowledge which is generated from real-world interactions. It can be simple things, like the insightful question a grad student, with minimal publication history, asks in a seminar.<p>Of course, the paywall is also unhelpful too, but a good, brief commentary by an appropriate commentator is a better link for 99% of prospective readers compared to most "peer reviewed" (scare quotes because that's a real question nowadays) articles.</p>
]]></description><pubDate>Sat, 15 Aug 2026 21:51:09 +0000</pubDate><link>https://news.ycombinator.com/item?id=49314652</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=49314652</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=49314652</guid></item><item><title><![CDATA[New comment by murphyslab in "Show HN: Isopolis – Isometric pixel map of SF"]]></title><description><![CDATA[
<p>Men in Black: <a href="https://floor796.com/#b2r4,541,605" rel="nofollow">https://floor796.com/#b2r4,541,605</a><p>Naruto: <a href="https://floor796.com/#t2l4,684,675" rel="nofollow">https://floor796.com/#t2l4,684,675</a><p>The author continues adding and refining the project, so if it isn't in there yet, perhaps in the future.</p>
]]></description><pubDate>Mon, 03 Aug 2026 02:46:16 +0000</pubDate><link>https://news.ycombinator.com/item?id=49150659</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=49150659</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=49150659</guid></item><item><title><![CDATA[New comment by murphyslab in "Show HN: Isopolis – Isometric pixel map of SF"]]></title><description><![CDATA[
<p>Incredible. It's easy to just go on browsing and exploring. The massive, scrollable pixel art aspect reminds me a little of Floor796: <a href="https://floor796.com/" rel="nofollow">https://floor796.com/</a></p>
]]></description><pubDate>Mon, 03 Aug 2026 01:50:22 +0000</pubDate><link>https://news.ycombinator.com/item?id=49150331</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=49150331</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=49150331</guid></item><item><title><![CDATA[New comment by murphyslab in "Show HN: CheapFoodMap – A map of good meals under $10"]]></title><description><![CDATA[
<p>Noticing all of the Costco hot dog listings on the map reminds me: There's also an incentive for businesses to pose as users and misreport prices of competitors. My local Costco gas station constantly has a set of users misreporting the price of fuel, reporting the price as several cents higher than in actuality, seemingly in order to prevent consumers from refueling there. Something to watch out for.</p>
]]></description><pubDate>Thu, 30 Jul 2026 09:39:33 +0000</pubDate><link>https://news.ycombinator.com/item?id=49107779</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=49107779</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=49107779</guid></item><item><title><![CDATA[New comment by murphyslab in "Amid nurse shortage, a university rolls out the welcome mat for men"]]></title><description><![CDATA[
<p>> I was aggressively recruited for education as a math undergrad.<p>Was it because you were male or because you were studying math? Many schools struggle to find good math teachers; it's one of the qualifications in perpetual shortage.</p>
]]></description><pubDate>Tue, 21 Jul 2026 17:11:43 +0000</pubDate><link>https://news.ycombinator.com/item?id=48995176</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=48995176</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=48995176</guid></item><item><title><![CDATA[New comment by murphyslab in "Show HN: 18 Words"]]></title><description><![CDATA[
<p>Suggestion: Require a user to hit ENTER or SPACE to clear the word, even if it's a wrong word. Being able to see the letters laid linearly is useful to solving. Automated clearing of wrong words is unhelpful.</p>
]]></description><pubDate>Thu, 09 Jul 2026 18:36:28 +0000</pubDate><link>https://news.ycombinator.com/item?id=48850498</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=48850498</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=48850498</guid></item><item><title><![CDATA[New comment by murphyslab in "I don't understand graphical abstracts. So I both hate and admire this one (2025)"]]></title><description><![CDATA[
<p>> I have never, ever – not even once – seen a graphical abstract that usefully “summarized the contents of an article”.<p>The author has never worked in chemistry. They are absolutely ubiquitous in scholarly journals for chemistry and I'd say that most people trained in chemistry often only read the graphical abstract when initially deciding whether the paper is worth a deeper read.  Perhaps chemistry is a naturally visual field, given that we rely on visualizations of reactions and mechanisms from the very start of our university education.<p>The table of contents (TOC) graphic usually shows a key chemical structure (thus bonding connectivity, angles, elements, and electronic configurations), reaction mechanisms or conditions, models, or even core results as graphs. Now I do not claim to understand what is implied in <i>every</i> TOC graphic, however I can immediately see which branches of chemistry the article relates to faster than I can process the title, especially in a multidisciplinary chemistry journal.<p>That ability to categorize to identify relevance is a bigger issue in reading a multidisciplinary chemistry journal like the Journal of the American Chemical Society:<p><a href="https://pubs.acs.org/toc/jacsat/current" rel="nofollow">https://pubs.acs.org/toc/jacsat/current</a><p>But graphical abstracts are still immensely useful within a subdiscipline such as organic chemistry, which I suspect were the early adopters of TOC graphics:<p><a href="https://pubs.acs.org/toc/joceah/current" rel="nofollow">https://pubs.acs.org/toc/joceah/current</a><p>The better graphical abstracts tend towards simplicity, but it's a challenging task to distill a year or more of research into a single picture. And, unfortunately, graphic design is not a subject for which scientists generally receive additional training, despite it being a core element of digital communication.</p>
]]></description><pubDate>Sun, 29 Mar 2026 22:46:50 +0000</pubDate><link>https://news.ycombinator.com/item?id=47568240</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=47568240</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=47568240</guid></item><item><title><![CDATA[New comment by murphyslab in "New accounts on HN more likely to use em-dashes"]]></title><description><![CDATA[
<p>A Bonferroni correction would be suitable. I usually see it used in genome-wide association studies (GWAS) that check to see if a trait or phenotype is influenced by any single nucleotide polymorphisms (SNPs) in a genome. So it's doing multiple testing on a scale of ~1 million.<p>> One of the simplest approaches to correct for multiple testing is the Bonferroni correction. The Bonferroni correction adjusts the alpha value from α = 0.05 to α = (0.05/k) where k is the number of statistical tests conducted. For a typical GWAS using 500,000 SNPs, statistical significance of a SNP association would be set at 1e-7. This correction is the most conservative, as it assumes that each association test of the 500,000 is independent of all other tests – an assumption that is generally untrue due to linkage disequilibrium among GWAS markers.<p><a href="https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002822" rel="nofollow">https://journals.plos.org/ploscompbiol/article?id=10.1371/jo...</a><p>cf: <a href="https://en.wikipedia.org/wiki/Bonferroni_correction" rel="nofollow">https://en.wikipedia.org/wiki/Bonferroni_correction</a></p>
]]></description><pubDate>Thu, 26 Feb 2026 16:13:59 +0000</pubDate><link>https://news.ycombinator.com/item?id=47168024</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=47168024</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=47168024</guid></item><item><title><![CDATA[New comment by murphyslab in "Canada's Carney called out for 'utilizing' British spelling"]]></title><description><![CDATA[
<p>One persistent problem is that there isn't a Canadian English spelling option in most software with spellchecking functionality. Often we are forced to choose between US English and British English spelling defaults, when neither is quite right. I suspect that this was a stylistic choice not of Carney himself, but whoever proofread the document. There has been considerable erosion in Canadian orthography in of late, which has only been made worse with the widespread adoption of UFLI English language learning materials in our schools' elementary curricula, which emphasizes American spelling and pronunciation.</p>
]]></description><pubDate>Tue, 16 Dec 2025 06:54:50 +0000</pubDate><link>https://news.ycombinator.com/item?id=46285576</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=46285576</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=46285576</guid></item><item><title><![CDATA[New comment by murphyslab in "All life copies DNA unambiguously into proteins. Archaea may be the exception"]]></title><description><![CDATA[
<p>Paper: <a href="https://doi.org/10.1073/pnas.2517473122" rel="nofollow">https://doi.org/10.1073/pnas.2517473122</a> (Open Access)</p>
]]></description><pubDate>Tue, 02 Dec 2025 03:54:54 +0000</pubDate><link>https://news.ycombinator.com/item?id=46117344</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=46117344</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=46117344</guid></item><item><title><![CDATA[All life copies DNA unambiguously into proteins. Archaea may be the exception]]></title><description><![CDATA[
<p>Article URL: <a href="https://news.berkeley.edu/2025/12/01/all-life-copies-dna-unambiguously-into-proteins-archaea-may-be-the-exception/">https://news.berkeley.edu/2025/12/01/all-life-copies-dna-unambiguously-into-proteins-archaea-may-be-the-exception/</a></p>
<p>Comments URL: <a href="https://news.ycombinator.com/item?id=46117343">https://news.ycombinator.com/item?id=46117343</a></p>
<p>Points: 7</p>
<p># Comments: 1</p>
]]></description><pubDate>Tue, 02 Dec 2025 03:54:54 +0000</pubDate><link>https://news.berkeley.edu/2025/12/01/all-life-copies-dna-unambiguously-into-proteins-archaea-may-be-the-exception/</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=46117343</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=46117343</guid></item><item><title><![CDATA[New comment by murphyslab in "Show HN: An easy-to-use online curve fitting tool"]]></title><description><![CDATA[
<p>Not to cast shade, but it looks like you've essentially built a front-end for Desmos. It definitely makes things faster than trying to do it directly in Desmos.<p>Suggestion: Most of the fits that you've done assume that the errors are normally distributed. It would be worthwhile adding some graphical or numerical checks on that, rather than having goodness of fit or visual inspection be the only indication if this is a faulty assumption.<p>It gave made for a good quick check testing some data I had.</p>
]]></description><pubDate>Fri, 14 Nov 2025 18:03:00 +0000</pubDate><link>https://news.ycombinator.com/item?id=45929649</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=45929649</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=45929649</guid></item><item><title><![CDATA[New comment by murphyslab in "Show HN: An easy-to-use online curve fitting tool"]]></title><description><![CDATA[
<p>Copy-paste worked perfectly for me. I just copied 16 data points I had in an open G Sheets tab and used the "Batch Add" button.</p>
]]></description><pubDate>Fri, 14 Nov 2025 17:53:34 +0000</pubDate><link>https://news.ycombinator.com/item?id=45929501</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=45929501</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=45929501</guid></item><item><title><![CDATA[New comment by murphyslab in "Show HN: I've build a platform for writing technical/scientific documents"]]></title><description><![CDATA[
<p>LaTeX was much easier with Overleaf for my PhD thesis. I still recommend that for friends starting a thesis or a book project. I even used it for recent book project with a friend.<p>As you noted, one needs a lot of fine tuning to meet publication rules & guidelines. Compared to a local LaTeX editor or Overleaf, this looks too generic to meet the needs I've had in the past. Sure, LaTeX can require a lot of tinkering, but PhD students ought be able to figure it out for themselves, whether through documentation, forums, or asking labmates.</p>
]]></description><pubDate>Mon, 06 Oct 2025 21:04:19 +0000</pubDate><link>https://news.ycombinator.com/item?id=45496315</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=45496315</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=45496315</guid></item><item><title><![CDATA[New comment by murphyslab in "YouTube says it'll bring back creators banned for Covid and election content"]]></title><description><![CDATA[
<p>Two articles that I found offered a well-rounded analysis:<p>- <a href="https://www.engadget.com/big-tech/youtube-may-reinstate-channels-banned-for-spreading-covid-and-election-misinformation-190257602.html" rel="nofollow">https://www.engadget.com/big-tech/youtube-may-reinstate-chan...</a><p>- <a href="https://arstechnica.com/gadgets/2025/09/youtube-will-restore-channels-banned-for-covid-and-election-misinformation/" rel="nofollow">https://arstechnica.com/gadgets/2025/09/youtube-will-restore...</a></p>
]]></description><pubDate>Tue, 23 Sep 2025 21:05:55 +0000</pubDate><link>https://news.ycombinator.com/item?id=45352743</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=45352743</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=45352743</guid></item><item><title><![CDATA[New comment by murphyslab in "Tech companies are telling immigrant employees on visas not to leave the U.S."]]></title><description><![CDATA[
<p>It's what their lawyers are advising them.<p>The Globe and Mail had a piece on March 25th on the advice that lawyers were giving to their clients, often Canadians working on TN visas down south:<p>>  York-based immigration law firm Dyer Harris LLP, which helps foreigners secure work visas in the U.S., sent an e-mail to their clients residing and working in the country to hold off on international travel altogether, unless in an emergency.<p><i>Lawyers advise Canadians working in U.S. to avoid travel amid border crackdown</i>, The Globe and Mail, 2025-03-25. <a href="https://web.archive.org/web/20250325223021/https://www.theglobeandmail.com/business/article-lawyers-advise-canadians-working-in-us-to-avoid-travel-amid-border/" rel="nofollow">https://web.archive.org/web/20250325223021/https://www.thegl...</a></p>
]]></description><pubDate>Thu, 03 Apr 2025 03:34:49 +0000</pubDate><link>https://news.ycombinator.com/item?id=43564415</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=43564415</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=43564415</guid></item><item><title><![CDATA[Norwegian Consumer Council: Report on virtual currencies in gaming [pdf]]]></title><description><![CDATA[
<p>Article URL: <a href="https://storage02.forbrukerradet.no/media/2024/09/getting-played-2024-compressed-komprimert-sept24-1.pdf">https://storage02.forbrukerradet.no/media/2024/09/getting-played-2024-compressed-komprimert-sept24-1.pdf</a></p>
<p>Comments URL: <a href="https://news.ycombinator.com/item?id=41712512">https://news.ycombinator.com/item?id=41712512</a></p>
<p>Points: 1</p>
<p># Comments: 0</p>
]]></description><pubDate>Tue, 01 Oct 2024 18:45:07 +0000</pubDate><link>https://storage02.forbrukerradet.no/media/2024/09/getting-played-2024-compressed-komprimert-sept24-1.pdf</link><dc:creator>murphyslab</dc:creator><comments>https://news.ycombinator.com/item?id=41712512</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=41712512</guid></item></channel></rss>