<rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Hacker News: toufka</title><link>https://news.ycombinator.com/user?id=toufka</link><description>Hacker News RSS</description><docs>https://hnrss.org/</docs><generator>hnrss v2.1.1</generator><lastBuildDate>Sun, 26 Apr 2026 10:00:24 +0000</lastBuildDate><atom:link href="https://hnrss.org/user?id=toufka" rel="self" type="application/rss+xml"></atom:link><item><title><![CDATA[New comment by toufka in "OpenAI agrees with Dept. of War to deploy models in their classified network"]]></title><description><![CDATA[
<p>1) Another OpenAI cofounder (Brockman) gave Trump’s superPAC the largest ever individual donation of $25m.<p>2) Trump’s son in law (Kushner) has most of his net worth wrapped up in OpenAI.</p>
]]></description><pubDate>Sat, 28 Feb 2026 04:05:52 +0000</pubDate><link>https://news.ycombinator.com/item?id=47190261</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=47190261</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=47190261</guid></item><item><title><![CDATA[New comment by toufka in "Human history in the very long run (2021)"]]></title><description><![CDATA[
<p>A representative idea: if you are the one to kill a deer to eat, you get a little bit of each cut - rib, loin, filet, heart, etc. When was the last time most people ate a filet mignon?<p>And if you gather food like berries and fruits - you (at least sometimes) get to eat foods ripened that day in the field. How many today get that luxury?<p>And if one of the things that provides joy to humans is to prepare their family’s food - many folks today would be disqualified.</p>
]]></description><pubDate>Mon, 15 Jul 2024 03:35:26 +0000</pubDate><link>https://news.ycombinator.com/item?id=40965081</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=40965081</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=40965081</guid></item><item><title><![CDATA[New comment by toufka in "Scientists create a cell that precludes malignant growth"]]></title><description><![CDATA[
<p>What about the heterogeneity of the original cells?</p>
]]></description><pubDate>Tue, 09 Jul 2024 21:05:06 +0000</pubDate><link>https://news.ycombinator.com/item?id=40921106</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=40921106</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=40921106</guid></item><item><title><![CDATA[New comment by toufka in "Scientists create a cell that precludes malignant growth"]]></title><description><![CDATA[
<p>Yep - cells would die. ...UNTIL they accrue enough dna damage to accidentally either:<p>- create a new way to generate thymidine<p>- fall into a proliferation strategy that no longer needs thymidine<p>Human cells did the same thing and created checkpoints to preclude malignant growth.  There are a number of checkpoints already employed in your own bodies.  But if you accrue enough DNA damage, you can get around each of those checkpoints (and get cancer):<p>- IF too much DNA damage, then die<p>- IF divided too many times, then die<p>- IF committed to die, actually die<p>But if a cell collects enough damage, it can get around ALL of the checkpoints.  And evolution has shown us that there is no perfect watcher of the watchmen.  Still pretty cool to create a new checkpoint this way.</p>
]]></description><pubDate>Tue, 09 Jul 2024 18:05:53 +0000</pubDate><link>https://news.ycombinator.com/item?id=40919078</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=40919078</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=40919078</guid></item><item><title><![CDATA[New comment by toufka in "Gene therapy restores hearing to children with inherited deafness"]]></title><description><![CDATA[
<p>And that’s why replies are helpful in these kind of explanations. My over-edits became wrong, and then an hour later, unfixable. bglazer is correct.<p>AAVs, unlike Lentiviruses, do NOT integrate.</p>
]]></description><pubDate>Mon, 10 Jun 2024 00:23:54 +0000</pubDate><link>https://news.ycombinator.com/item?id=40628774</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=40628774</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=40628774</guid></item><item><title><![CDATA[New comment by toufka in "Gene therapy restores hearing to children with inherited deafness"]]></title><description><![CDATA[
<p>If the DNA is in the cell's nucleus, the DNA will be utilized to produce whatever gene is encoded in the DNA.  But if the DNA is just floating around on its own it will not survive a cell division event and the material would need to be periodically reinjected to keep working.  However, if the injected DNA is part of a full chromosome, it will be replicated when the cell divides - and will be permanent as long as the cell or its progeny survive.<p>Some viruses will just inject the DNA into cells, but will not become part of the cell's genome ("transient" transduction).  Other viruses (like lentiviruses and these adeno-associated viruses [AAVs]) inject their DNA not just into the cells, but also have machinery that splices their payload DNA directly into the cell's chromosomes ("integrated"). The location in the genome of the splicing event is relatively random.  Random is not necessarily great as it could interrupt other genes already in the chromosome.  CRISPR is a now-famous tool that helps "integrate" DNA into a specific spot in the genome by being guided to a specific location with a small piece of a specific sequence.<p>Once the DNA is integrated, any cell, and any of the cell's progeny, will produce or "express" the gene on the delivered DNA.  In this case, they delivered the 5991 characters of DNA associated with the OROF gene [1].<p>[1] <a href="https://en.wikipedia.org/wiki/Otoferlin" rel="nofollow">https://en.wikipedia.org/wiki/Otoferlin</a></p>
]]></description><pubDate>Sun, 09 Jun 2024 14:46:15 +0000</pubDate><link>https://news.ycombinator.com/item?id=40624796</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=40624796</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=40624796</guid></item><item><title><![CDATA[New comment by toufka in "NASA spacecraft films crazy vortex while flying through sun's atmosphere"]]></title><description><![CDATA[
<p>Timestamp in the videos:  21:03-4:33 => 7.5hrs</p>
]]></description><pubDate>Sat, 06 Apr 2024 16:20:39 +0000</pubDate><link>https://news.ycombinator.com/item?id=39953436</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=39953436</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=39953436</guid></item><item><title><![CDATA[New comment by toufka in "The U.S. just sold its helium stockpile"]]></title><description><![CDATA[
<p>There’s one law of physics difference here: (with a few exceptions) helium, because it’s lighter than air, will never replenish on our planet. There is currently most of what there ever will be. Unlike (almost?) every other object of commerce, there is an almost completely inelastic total supply. It is the ultimate non-renewable resource.</p>
]]></description><pubDate>Sat, 27 Jan 2024 00:44:11 +0000</pubDate><link>https://news.ycombinator.com/item?id=39151029</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=39151029</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=39151029</guid></item><item><title><![CDATA[New comment by toufka in "Double-mirror illusion"]]></title><description><![CDATA[
<p>and youtube video of the 'reveal':<p><a href="https://www.youtube.com/watch?v=n--zawliqvA" rel="nofollow noreferrer">https://www.youtube.com/watch?v=n--zawliqvA</a></p>
]]></description><pubDate>Fri, 15 Dec 2023 23:54:36 +0000</pubDate><link>https://news.ycombinator.com/item?id=38660324</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=38660324</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=38660324</guid></item><item><title><![CDATA[New comment by toufka in "Formula 1 didn't realize Las Vegas would be cold in November"]]></title><description><![CDATA[
<p>Indianapolis was too fast and hot that one year, one of the (two) tire manufactures disqualified their tires (and teams).  So not even half the field ran the race.  The Indy 500 course has a half-mile straightaway which allowed the F1 cars to build up unprecedented speed - all in hot midwestern summer heat.<p>Seems the diligence on local weather is not so good with these folks...<p>[*] "Michelin's tyre mistake sends US Formula One Grand Prix into farce" <a href="https://en.wikinews.org/wiki/Michelin%27s_tyre_mistake_sends_US_Formula_One_Grand_Prix_into_farce" rel="nofollow noreferrer">https://en.wikinews.org/wiki/Michelin%27s_tyre_mistake_sends...</a></p>
]]></description><pubDate>Sun, 12 Nov 2023 03:20:01 +0000</pubDate><link>https://news.ycombinator.com/item?id=38236940</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=38236940</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=38236940</guid></item><item><title><![CDATA[New comment by toufka in "On the 10th anniversary of the Snowden revelations"]]></title><description><![CDATA[
<p>Snowden also brought the goods (actual docs) so that the existing cases and inquiries could proceed without getting the Glomar response - “cannot answer the question of whether you have standing, as we can neither confirm nor deny the program either exists.”<p>And this was deliberate. Those in the know knew _of_ the program, but could do little actionable with that knowledge without Snowden’s public proof.</p>
]]></description><pubDate>Wed, 06 Sep 2023 07:03:41 +0000</pubDate><link>https://news.ycombinator.com/item?id=37402089</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=37402089</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=37402089</guid></item><item><title><![CDATA[New comment by toufka in "A biological camera that captures and stores images directly into DNA"]]></title><description><![CDATA[
<p>You (at least) have 3 systems that are optimized in concert in a (our) DNA/Protein world.<p>DNA base set, Amino acid set, Translation layer between DNA/Proteins.<p>Currently, we've got:
4 DNA bases, 3 bases/AA, 20 AAs;
4^3 => 20<p>If you change one of those numbers, you'll need to rejigger the rest, and you'd need to reoptimize.  And there are competing goals which at least include:
- maximize access to biophysical/chemical diversity 
- minimize energy expenditure to produce each component, chemically
- minimize energy expenditure to both copy instructions & produce products
- maximize information fidelity
- minimize or at least degrade gracefully in the context of errors<p>In the context of a 3-base system, you very well could throw off those optimizations given the consequences for the other 2 parameters (#AA & nt/AA). 3^3 = 27, which is very close to the maximum of 20 amino acids.  Which means you'd probably need a 4nt->AA translation layer to keep the same number of AAs, and that alone would add 30% more energy expenditure.  If you kept the 3nt->AA system you'd BOTH need to reduce the number of accessible amino acids AND you'd lose some of the error correction mechanisms of having degenerate codons code for the same amino acid.</p>
]]></description><pubDate>Mon, 10 Jul 2023 18:15:12 +0000</pubDate><link>https://news.ycombinator.com/item?id=36670617</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=36670617</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=36670617</guid></item><item><title><![CDATA[New comment by toufka in "A biological camera that captures and stores images directly into DNA"]]></title><description><![CDATA[
<p>BUT, if you look at the codon table, precisely because it's base-4 and not base-3, many base flips are silent when coded.<p>By using base-4, there's enough space to permit lossiness of the coding itself - given the number of amino acids and the 3-NT encoding.<p>So you really aren't optimizing JUST for nucleotide encoding, but you're also optimizing in concert with 3-nt/AA, and 20AA codes.<p>So if you have to optimize for information density and fidelity, given X-nucleotides, Y nucleotides/AA, and Z AAs, and sample as much chemical and physical diversity in those AAs life has settled upon:
X=4, Y=3, Z=20.<p>If we went with X=3, you might need Y=4 to get the same kind of fidelity, but that cranks up your energy costs by 30% (from 3 to 4 NT per AA).</p>
]]></description><pubDate>Mon, 10 Jul 2023 18:12:35 +0000</pubDate><link>https://news.ycombinator.com/item?id=36670565</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=36670565</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=36670565</guid></item><item><title><![CDATA[New comment by toufka in "SF payroll firm Rippling has to delay payouts after Silicon Valley Bank collapse"]]></title><description><![CDATA[
<p>Which is why an enormous number of people will be fired, furloughed or reduced to minimum wage on Monday if this isn’t resolved.</p>
]]></description><pubDate>Sat, 11 Mar 2023 14:49:39 +0000</pubDate><link>https://news.ycombinator.com/item?id=35108679</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=35108679</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=35108679</guid></item><item><title><![CDATA[New comment by toufka in "FDIC Takes over Silicon Valley Bank"]]></title><description><![CDATA[
<p>And in this case, tech savy individuals are willing to send $XXM in 6 clicks, 3min after getting a slack message.  That's a pretty quick kind of run relative to old-school 'stand in line for your personal life savings' kind of run.</p>
]]></description><pubDate>Fri, 10 Mar 2023 19:22:52 +0000</pubDate><link>https://news.ycombinator.com/item?id=35099474</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=35099474</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=35099474</guid></item><item><title><![CDATA[New comment by toufka in "The Sad Saga of the 500 MHz Power Mac G4"]]></title><description><![CDATA[
<p>The quotes seem to be OCR’d with 500 being 5oo, and punctuation in weird spots too.</p>
]]></description><pubDate>Wed, 09 Nov 2022 16:43:09 +0000</pubDate><link>https://news.ycombinator.com/item?id=33534159</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=33534159</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=33534159</guid></item><item><title><![CDATA[New comment by toufka in "Nobel Prize in Chemistry Awarded to Bertozzi, Meldal, and Sharpless"]]></title><description><![CDATA[
<p>It seems “simple” from a chemistry perspective.  But as pointed out, the special part is that this is simple chemistry, _that also works in standard biological conditions_ without harming biology: bio-orthogonal. So it allows complex chemistries to be brought into biological contexts easily and completely. So the discoveries made with this novel chemistry will be biological in nature. That makes for an awkward audience when one is siloed either on the chemistry side or the biology side and can’t quite see how much of a door is opened when you combine the disciplines.</p>
]]></description><pubDate>Wed, 05 Oct 2022 16:26:22 +0000</pubDate><link>https://news.ycombinator.com/item?id=33097557</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=33097557</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=33097557</guid></item><item><title><![CDATA[New comment by toufka in "Weedkiller ingredient tied to cancer found in 80% of US urine samples"]]></title><description><![CDATA[
<p>Deere bought the startup Blue River for $300M. Drones to identify and specifically spray just them. Not quite mechanical removal, but closer than spraying the whole field:<p><a href="https://medium.com/@dcvc/john-deere-acquires-blue-river-technology-for-305-million-bringing-full-stack-ai-to-agriculture-7ca8c25a5fe1" rel="nofollow">https://medium.com/@dcvc/john-deere-acquires-blue-river-tech...</a></p>
]]></description><pubDate>Sat, 09 Jul 2022 15:43:15 +0000</pubDate><link>https://news.ycombinator.com/item?id=32036090</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=32036090</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=32036090</guid></item><item><title><![CDATA[New comment by toufka in "Musk, Twitter and the future: His long-term vision is weirder than you think"]]></title><description><![CDATA[
<p>This is an unhelpful article because it straw-mans every argument, and mischaracterizes the primary material.<p>> More recently, Bostrom has said that "unrestricted altruism is not so common that we can afford to fritter it away on a plethora of feel-good projects of suboptimal efficacy," such as helping the poor, solving world hunger, promoting LGBTQ rights and women's equality, fighting racism, eliminating factory farming and so on.<p>If you actually link to the article, the quoted sentence does exist, but the following implications very clearly are absent.  There is no such suggestion that "fighting racism" is a "project of suboptimal efficacy".  This is very clearly a disingenuous argument.<p>As are many of the other of the article's points.  There's plenty of room for honest and productive critique - this is not that.</p>
]]></description><pubDate>Sun, 01 May 2022 02:45:03 +0000</pubDate><link>https://news.ycombinator.com/item?id=31221684</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=31221684</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=31221684</guid></item><item><title><![CDATA[New comment by toufka in "Bits of advice I wish I had known"]]></title><description><![CDATA[
<p>“Don't it always seem to go 
That you don't know what you've got 
Till it's gone 
They paved paradise 
And put up a parking lot”</p>
]]></description><pubDate>Fri, 29 Apr 2022 01:46:07 +0000</pubDate><link>https://news.ycombinator.com/item?id=31200434</link><dc:creator>toufka</dc:creator><comments>https://news.ycombinator.com/item?id=31200434</comments><guid isPermaLink="false">https://news.ycombinator.com/item?id=31200434</guid></item></channel></rss>